Training materials
Contributors: Federico Bianchini or Alex Ostrovsky or Derek Wright or Stian Soiland-Reyes or Wendi Bacon
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hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell RNA Datasets' tutorial
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hands-on tutorial
Hands-on for 'Downstream Single-cell RNA analysis with RaceID' tutorial
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hands-on tutorial
Hands-on for 'Generating a single cell matrix using Alevin' tutorial
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hands-on tutorial
Hands-on for 'Bulk RNA Deconvolution with MuSiC' tutorial
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hands-on tutorial
Hands-on for 'Filter, Plot and Explore Single-cell RNA-seq Data' tutorial
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slides
Slides for 'Plates, Batches, and Barcodes' tutorial
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slides
Slides for 'Dealing with Cross-Contamination in Fixed Barcode Protocols' tutorial
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Carpentries style curriculum
Introduction to Workflows with Common Workflow Language
• beginnerWorkflows RNA-Seq analysis cwl commonwl sciworkflows workflows