Welcome to TeSS: Elixir's Training Portal

Browsing, discovering and organising life sciences training resources, aggregated from ELIXIR nodes and 3rd-party providers.

Latest Content in TeSS

CodeRefinery workshop

In this course, you will become familiar with tools and best practices for scientific software development. This course will not teach a programming language, but we teach the tools you need to do programming well and avoid common inefficiency traps. The tools we teach are practically a...

Added to TeSS today
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial

The questions this addresses are:
- Learn how to get and use data from the Sequence Read Archive in Galaxy.

\nThe objectives are:
- Understand how Galaxy and the Sequence Read Archive interact.
- Be able to go from Galaxy to the Short Reach Archive, query SRA, use the SRA Run Selector to...

Scientific topics: Genetic variation

Keywords: variant-analysis, covid19

Added to TeSS 3 days ago
Hands-on for 'Exome sequencing data analysis for diagnosing a genetic disease' tutorial

The questions this addresses are:
- How do you identify genetic variants in samples based on exome sequencing data?
- How do you, among the set of detected variants, identify candidate causative variants for a given phenotype/disease?

\nThe objectives are:
- Jointly call variants and...

Scientific topics: Genetic variation

Keywords: variant-analysis

Added to TeSS 3 days ago
Hands-on for 'Mapping and molecular identification of phenotype-causing mutations' tutorial

The questions this addresses are:
- What is mapping-by-sequencing?
- How can it help you identify the causative mutation in phenotypic mutants isolated from genetic screens?

\nThe objectives are:
- Use joint variant calling and extraction to facilitate variant comparison across samples
-...

Scientific topics: Genetic variation

Keywords: variant-analysis

Added to TeSS 3 days ago
Hands-on for 'Identification of somatic and germline variants from tumor and normal sample pairs' tutorial

The questions this addresses are:
- What are the specific challenges in somatic variant calling that set it apart from regular diploid variant calling?
- How can you call variants and classify them according to their presence/absence in/from tumor and normal tissue of the same individual?
-...

Scientific topics: Genetic variation

Keywords: variant-analysis

Added to TeSS 3 days ago
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial

The questions this addresses are:
- How can we extract annotated allelic variants in SARS-Cov-2 sequences in Galaxy?
- Which tools and workflows can we use to identify SARS-CoV-2 lineages in Galaxy?

\nThe objectives are:
- Repeat SARS-CoV-2 data preparation
- Select and run workflow to...

Scientific topics: Genetic variation

Keywords: variant-analysis, covid19

Added to TeSS 3 days ago
An introduction to EMBL-EBI resources

EMBL-EBI is the home of the world's most comprehensive range of freely available molecular databases and resources. Our resources help researchers share and analyse data and perform complex queries in many different ways. Join us for a tour of the core data resources at EMBL-EBI.

During this...

Keywords: Cross domain (cross-domain)

Added to TeSS 3 days ago
Finding Pfam's protein families data in the InterPro website

Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Together with twelve other resources, it is part of the InterPro member database consortium.

After 20 years of good and faithful service, we have decided to retire the Pfam...

Keywords: InterPro (5519), Pfam (5533), Proteins (proteins)

Added to TeSS 3 days ago
Organisation and utilisation of hologenomic datasets

This course will cover the generation and application of large-scale holo-omic data sets, such as those produced within the HoloFood project.

There is an increasing recognition that organisms do not exist in isolation, but are actually holobionts, composed of the host and the many...

Added to TeSS 3 days ago
Bioinformatics approaches to viruses

This workshop will provide training on the use of bioinformatics tools to understand viral pathogens’ sequencing data. Trainees will receive training on viral genome assembly, comparative viral genomics, phylogenomics, metaviromics, and downstream applications of this data in research and applied...

Added to TeSS 3 days ago
VEIS - Value of the EGA for Industry and Society

This collection contains training materials developed during the training events of the RIS3CAT VEIS project.

The RIS3CAT VEIS project will create an open ecosystem of technologies that covers and adapts to the needs of analysis and interpretation of omic and clinical data in research and...

Added to TeSS 41 days ago
Single-cell Omics Community - collection of courses and materials

Single-cell omics community - collection of courses and materials.

Keywords: single-cell omics, scRNA-seq

Added to TeSS 80 days ago