hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell RNA Datasets' tutorial
The questions this addresses are:
- What is 10X?
- What is STARsolo and what is Cell Ranger?
- What are BCL and MTX files?
- What is an HDF5 file, and why is it important?
The objectives are:
- Demultiplex single-cell FASTQ data from 10X Genomics
- Learn about transparent matrix formats
- Understand the importance of high and low quality cells
Licence: Creative Commons Attribution 4.0 International
Keywords: single-cell, single-cell, 10x
Target audience: Students
Resource type: hands-on tutorial
Contributors: Daniel Blankenberg, Hans-Rudolf Hotz, Mehmet Tekman, Wendi Bacon
Scientific topics: Transcriptomics
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