hands-on tutorial

Hands-on for 'Pre-processing of 10X Single-Cell RNA Datasets' tutorial

The questions this addresses are:
- What is 10X?
- What is STARsolo and what is Cell Ranger?
- What are BCL and MTX files?
- What is an HDF5 file, and why is it important?

The objectives are:
- Demultiplex single-cell FASTQ data from 10X Genomics
- Learn about transparent matrix formats
- Understand the importance of high and low quality cells

Licence: Creative Commons Attribution 4.0 International

Keywords: single-cell, single-cell, 10x

Target audience: Students

Resource type: hands-on tutorial

Authors: Daniel Blankenberg, Hans-Rudolf Hotz, Mehmet Tekman, Wendi Bacon

Contributors: Daniel Blankenberg, Hans-Rudolf Hotz, Mehmet Tekman, Wendi Bacon

Scientific topics: Transcriptomics


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