hands-on tutorial
Hands-on for 'Generating a single cell matrix using Alevin' tutorial
The questions this addresses are:
- I have some single cell FASTQ files I want to analyse. Where do I start?
The objectives are:
- Generate a cellxgene matrix for droplet-based single cell sequencing data
- Interpret quality control (QC) plots to make informed decisions on cell thresholds
- Find relevant information in GTF files for the particulars of their study, and include this in data matrix metadata
Licence: Creative Commons Attribution 4.0 International
Keywords: single-cell, single-cell, 10x, paper-replication, español, transcriptomics
Target audience: Students
Resource type: hands-on tutorial
Contributors: Jonathan Manning, Wendi Bacon
Scientific topics: Transcriptomics
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