Training materials
Licence: Creative Commons Attribution 4.0 International
and Keywords: RNA-Seq or Biomedical Literature or Cross domain or Variant calling or covid19
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e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
WEBINAR: Variant interpretation: from the clinic to the lab… and back again
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WEBINAR: Getting started with whole genome mapping and variant calling on the command line
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WORKSHOP: Variant calling in humans, animals and plants with Galaxy
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hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
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hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediateGenetic variation variant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateSequence assembly assembly covid19 -
hands-on tutorial
Hands-on for 'Automating Galaxy workflows using the command line' tutorial
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hands-on tutorial
Hands-on for 'SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis' tutorial
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hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediateSequence analysis sequence-analysis covid19
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