hands-on tutorial

Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial

View material

The questions this addresses are:
- How can you remove traces of human sequence data from a sequenced viral sample?

The objectives are:
- Obtain viral (SARS-CoV-2) sequencing data with contaminating human reads from public sources
- Organize the data into a collection
- Preprocess and map the data against the human reference genome
- Eliminate reads/read pairs that map to the human genome from the original data

Licence: Creative Commons Attribution 4.0 International

Keywords: sequence-analysis, covid19

Target audience: Students

Resource type: hands-on tutorial

Authors: Wolfgang Maier

Contributors: Wolfgang Maier

Scientific topics: Sequence analysis

Activity log