hands-on tutorial

Hands-on for 'SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis' tutorial

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The questions this addresses are:
- How can I search SRA SARS-CoV-2 metadata from within Galaxy?
- How can I import SRA aligned read files and extract the data in my format of choice?
- How can I import vcf files into Galaxy that have been generated for these Runs?

The objectives are:
- Learn about SRA aligned read format and vcf files for Runs containing SARS-CoV-2 content
- Understand how to search the metadata for these Runs to find your dataset of interest and then import that data in your preferred format

Licence: Creative Commons Attribution 4.0 International

Keywords: galaxy-interface, ncbi, covid19

Target audience: Students

Resource type: hands-on tutorial

Authors: Adelaide Rhodes, Jon Trow

Contributors: Adelaide Rhodes, Jon Trow

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