hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
The questions this addresses are:
- Learn how to get and use data from the Sequence Read Archive in Galaxy.
The objectives are:
- Understand how Galaxy and the Sequence Read Archive interact.
- Be able to go from Galaxy to the Short Reach Archive, query SRA, use the SRA Run Selector to send selected metadata to Galaxy, and then import sequence data from SRA into Galaxy.
Licence: Creative Commons Attribution 4.0 International
Keywords: variant-analysis, covid19, virology
Target audience: Students
Resource type: hands-on tutorial
Contributors: Anton Nekrutenko, Daniel Blankenberg, Dave Clements, Marius van den Beek
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