Training materials
Difficulty level: Intermediate
and Authors: Cristóbal Gallardo or Donny Vrins or Jessica Kirkpatrick krkptrc2@illinois.edu or Marta Lloret Llinares or blankclemens
-
Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Globbing' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Make & Snakemake' tutorial
•• intermediateSoftware engineering data-science -
Video
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects
•• intermediateData architecture, analysis and design Cloud computing Data analysis Standards Translational research -
Video
Status Update Code of Conduct: Teaming up & Talking about it
•• intermediateGDPR Healthcare research data harmonization