Training materials
Authors: Alex Ostrovsky or Jared Simpson or Jessica Kirkpatrick krkptrc2@illinois.edu or Marta Lloret Llinares or bebatut
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
Hands-on for 'Calling variants in non-diploid systems' tutorial
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hands-on tutorial
Hands-on for 'Creating Galaxy tools from Conda Through Deployment' tutorial
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hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'Downstream Single-cell RNA analysis with RaceID' tutorial
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slides
Slides for 'Plates, Batches, and Barcodes' tutorial
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slides
Slides for 'Dealing with Cross-Contamination in Fixed Barcode Protocols' tutorial
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Video
FAIR software tools
• beginnerSoftware engineering FAIR software tools Software -
Video
Making cohort data FAIR
• beginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards