Training materials
Tools: runBioSimulations or ORGANISMS or MaBoSS or Data Information System (DAISY) or CellNOptR
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Tutorial
From transcriptomics to mechanistic models of signalling
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Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Tutorial
Tutorial on CellNOpt
•• intermediatePersonalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining