Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware information retrieval
  • extract associations based on cooccurrence of entities in the literature
  • discover novel, indirect associations between entities
  • perform text-mining-based term enrichment analysis

Licence: Creative Commons Attribution 4.0 International


Additional information

Target audience: Bioinformaticians, Biologists

Authors: Evangelos Pafilis, Lars Juhl Jensen

Contributors: Manimozhiyan Arumugam

Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining

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