runBioSimulations tutorial and help
runBioSimulations is a web application for executing a broad range of modeling studies and visualizing their results. runBioSimulations uses BioSimulators to supports a broad range of modeling frameworks (e.g., logical, constraint-based, kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BNGL, SBML). runBioSimulations also provides a REST API for programmatic access to the same simulation capabilities.
The runBioSimulations tutorial and help describes how to use this web application and web service to execute simulations and visualize their results. This includes instructions on how to create COMBINE/OMEX archives of modeling projects.
Licence: Creative Commons Zero v1.0 Universal
Keywords: biosimulators, COMBINE, OMEX, SED-ML, Modeling, dynamic simulations, SBML, BNGL
Target audience: modelers
Resource type: Tutorial, Documentation
Contributors: Ion Moraru, Bilal Shaikh, Gnaneswara Marupilla
Scientific topics: Simulation experiment, Computational biology, Systems biology
Operations: Modelling and simulation