This tutorial demonstrate how to use V-pipe - Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations.
For the purpose of this toturial, we use the sars-cov2 branch of V-pipe and analyse SARS-CoV-2 runs downloaded from NCBI SRA.
Scientific topics: Virology, Genetic variation, Workflows
Operations: Variant calling, Alignment, Read pre-processing
Keywords: coronavirus, NGS bioinformatics, Variant-calling
Resource type: Computer Software, workflow
Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.
The exercises will teach you how to:
- automatically highlight named entities in a web page
- use named entity recognition for synonym-aware...
Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining
