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How to use V-pipe (SARS-CoV-2 data)

https://cbg-ethz.github.io/V-pipe/tutorial/sars-cov2/

This tutorial demonstrate how to use V-pipe - Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations.

For the purpose of this toturial, we use the sars-cov2 branch of V-pipe and analyse SARS-CoV-2 runs downloaded from NCBI SRA.

Licence: Creative Commons Attribution Share Alike 4.0 International

Keywords: coronavirus, NGS bioinformatics, Variant-calling

Additional information

Target audience: bioinformaticians, Biologists, Genomicists, Computer Scientists

Resource type: Computer Software, workflow

Authors: Ivan Topolsky

Scientific topics: Virology, Genetic variation, Workflows

Operations: Variant calling, Alignment, Read pre-processing

External resources:

V-pipe