Register training material
6 materials found

Related resources: Introduction to Galaxy dataset  or Sequence analysis dataset 


Introduction to Galaxy Analyses - From peaks to genes

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Questions of the tutorial:

  • How to use Galaxy?
  • How to get...

Resource type: Tutorial

Sequence analysis - RAD-Seq to construct genetic maps

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data for a genetic map study?

Objectives of the tutorial:

  • SNP calling from RAD sequencing data
  • Find and correct haplotypes
  • Create input files for genetic map building software

Resource type: Tutorial

Sequence analysis - RAD-Seq de-novo data analysis

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data without a reference genome for a population genomics study?

Objectives of the tutorial:

  • Analysis of RAD sequencing data without a reference genome
  • SNP calling from RAD sequencing data
  • Calculate...

Resource type: Tutorial

Sequence analysis - RAD-Seq Reference-based data analysis

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data using a reference genome for a population genomics study?

Objectives of the tutorial:

  • Analysis of RAD sequencing data using a reference genome
  • SNP calling from RAD sequencing data
  • Calculate population...

Resource type: Tutorial

Sequence analysis - Mapping

Analyses of sequences

Questions of the tutorial:

  • What two things are crucial for a correct mapping?
  • What is BAM?

Objectives of the tutorial:

  • You will learn what mapping is
  • A genome browser is shown that helps you to understand your data

Resource type: Tutorial

Sequence analysis - Quality Control

Analyses of sequences

Questions of the tutorial:

  • How to control quality of NGS data?
  • What are the quality parameters to check for each dataset?
  • How to improve the quality of a sequence dataset?

Objectives of the tutorial:

  • Manipulate FastQ files
  • Control quality from a FastQ file -...

Resource type: Tutorial