Sequence analysis - RAD-Seq to construct genetic maps
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data for a genetic map study?
Objectives of the tutorial:
- SNP calling from RAD sequencing data
- Find and correct haplotypes
- Create input files for genetic map building software
Sequence analysis - RAD-Seq to construct genetic maps
http://galaxyproject.github.io/training-material/topics/sequence-analysis/tutorials/genetic-map-rad-seq/tutorial.html
http://tess.elixir-uk.org/materials/analysis-of-sequences-rad-seq-to-construct-genetic-maps
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data for a genetic map study?
Objectives of the tutorial:
- SNP calling from RAD sequencing data
- Find and correct haplotypes
- Create input files for genetic map building software
yvanlebras
Sequence analysis - RAD-Seq de-novo data analysis
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data without a reference genome for a population genomics study?
Objectives of the tutorial:
- Analysis of RAD sequencing data without a reference genome
- SNP calling from RAD sequencing data
- Calculate...
Sequence analysis - RAD-Seq de-novo data analysis
http://galaxyproject.github.io/training-material/topics/sequence-analysis/tutorials/de-novo-rad-seq/tutorial.html
http://tess.elixir-uk.org/materials/analysis-of-sequences-rad-seq-de-novo-data-analysis
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data without a reference genome for a population genomics study?
Objectives of the tutorial:
- Analysis of RAD sequencing data without a reference genome
- SNP calling from RAD sequencing data
- Calculate population genomics statistics from RAD sequencing data
yvanlebras
Sequence analysis - RAD-Seq Reference-based data analysis
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data using a reference genome for a population genomics study?
Objectives of the tutorial:
- Analysis of RAD sequencing data using a reference genome
- SNP calling from RAD sequencing data
- Calculate population...
Sequence analysis - RAD-Seq Reference-based data analysis
http://galaxyproject.github.io/training-material/topics/sequence-analysis/tutorials/ref-based-rad-seq/tutorial.html
http://tess.elixir-uk.org/materials/analysis-of-sequences-rad-seq-reference-based-data-analysis
Analyses of sequences
Questions of the tutorial:
- How to analyze RAD sequencing data using a reference genome for a population genomics study?
Objectives of the tutorial:
- Analysis of RAD sequencing data using a reference genome
- SNP calling from RAD sequencing data
- Calculate population genomics statistics from RAD sequencing data
yvanlebras
Sequence analysis - Mapping
Analyses of sequences
Questions of the tutorial:
- What two things are crucial for a correct mapping?
- What is BAM?
Objectives of the tutorial:
- You will learn what mapping is
- A genome browser is shown that helps you to understand your data
Sequence analysis - Mapping
http://galaxyproject.github.io/training-material/topics/sequence-analysis/tutorials/mapping/tutorial.html
http://tess.elixir-uk.org/materials/analysis-of-sequences-mapping
Analyses of sequences
Questions of the tutorial:
- What two things are crucial for a correct mapping?
- What is BAM?
Objectives of the tutorial:
- You will learn what mapping is
- A genome browser is shown that helps you to understand your data
joachimwolff
Sequence analysis - Quality Control
Analyses of sequences
Questions of the tutorial:
- How to control quality of NGS data?
- What are the quality parameters to check for each dataset?
- How to improve the quality of a sequence dataset?
Objectives of the tutorial:
- Manipulate FastQ files
- Control quality from a FastQ file
-...
Sequence analysis - Quality Control
http://galaxyproject.github.io/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html
http://tess.elixir-uk.org/materials/analysis-of-sequences-quality-control
Analyses of sequences
Questions of the tutorial:
- How to control quality of NGS data?
- What are the quality parameters to check for each dataset?
- How to improve the quality of a sequence dataset?
Objectives of the tutorial:
- Manipulate FastQ files
- Control quality from a FastQ file
- Use FastQC tool
- Understand FastQC output
- Use tools for quality correction
bebatut
