Training materials
Scientific topics: Genetic variation or Genotype and phenotype or Metabolomics or Natural language processing or Plant biology
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WORKSHOP: Variant calling in humans, animals and plants with Galaxy
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Video, Slides
Plant Phenotyping Data managment Webinar (MIAPPE)
• beginnerPlant biology Phenomics Data quality management Data submission, annotation, and curation Standardisation and normalisation -
Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
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Tutorial
#metawinterschool contribution by BiGCaT
• beginnerMetabolomics Identifiers ELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
TGAC_SeqAhead: NGS current challenges and data analysis for plant researchers