Training materials
Keywords: Biomedical Literature or Anatomy Physiology and Atlases or RDF or single-cell or NGS
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tutorial
Introduction to NGS Data Management
• beginnerRDM Research Data Management NGS Bioinformatics Data Management Plan -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell ATAC-seq Datasets' tutorial
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hands-on tutorial
Hands-on for 'Inferring Trajectories using Monocle3 (R)' tutorial
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e-learning
Introduction to single cell RNAseq analysis workshop
• beginnerbioinformatics RNAseq single cell NGS python R -
e-learning
Introduction to bulk RNAseq analysis workshop
• beginnerbioinformatics RNAseq bulk NGS -
hands-on tutorial
Hands-on for 'Removing the effects of the cell cycle' tutorial
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hands-on tutorial
Hands-on for 'Comparing inferred cell compositions using MuSiC deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial