Training materials
Difficulty level: Intermediate
and Keywords: RNA-Seq or Structure prediction or assembly or computer-science or virology
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hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediateGenetic variation variant-analysis virology -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateSequence assembly assembly quality control -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediateGenetic variation variant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateSequence assembly assembly covid19 -
hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateSequence assembly assembly pacbio -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateSequence assembly assembly pacbio eukaryote VGP -
slides
Slides for 'Deeper look into Genome Assembly algorithms' tutorial
•• intermediateSequence assembly assembly
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