Training materials
Contributors: Allegra Via or Anatole Chessel or Thomas Denecker or Beatriz Serrano-Solano
-
thomasdenecker/FAIR_Bioinfo
-
hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
-
hands-on tutorial
Hands-on for 'Analysis of plant scRNA-Seq Data with Scanpy' tutorial
-
hands-on tutorial
Hands-on for 'Object tracking using CellProfiler' tutorial
-
hands-on tutorial
Hands-on for 'Nucleoli segmentation and feature extraction using CellProfiler' tutorial
-
slides
Slides for 'Nucleoli Segmentation <br> & <br> Feature Extraction <br> using CellProfiler' tutorial
-
Slides
FAIR data - Module 4 (share and publish data)
• beginnerBioinformatics Biology Data management data sharing Data publishing legal framework data warehouse licensing data reuse -
Slides
FAIR data - Module 1 (research data)
• beginnermetadata Data Life Cycle Reproducibility Data management plan -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases -
Jupyter notebook, PDF
Introductory image processing on biological images using python.
• beginner