hands-on tutorial

Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial

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The questions this addresses are:
- Which miRNAs are upregulated in response to brassinosteroids?
- Which genes are potential target of brassinosteroid-induced miRNAs?

The objectives are:
- Perform miRNA differential expression analysis
- Understand the quasi-mapping-based Salmon method for quantifying the expression of transcripts using RNA-Seq data
- Idenfity potential miRNAs involved in brassinosteroid-mediated regulation networks

Licence: Creative Commons Attribution 4.0 International

Keywords: transcriptomics, miRNA, plants, stress tolerance

Target audience: Students

Resource type: hands-on tutorial

Authors: Beatriz Serrano-Solano, Cristóbal Gallardo, Pavankumar Videm

Contributors: Beatriz Serrano-Solano, Cristóbal Gallardo, Pavankumar Videm

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