Training materials
Resource type: Tutorial
and Authors: Jan Slifka or Jonathan Karr or Terri Attwood or blankclemens or tseemann
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Development in Galaxy - Galaxy Webhooks
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Tutorial
Introduction to Galaxy Analyses - Galaxy 101
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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Tutorial
Transcriptomics - Reference-based RNA-Seq data analysis
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