France
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PDF
PacBio de novo genome assembly - Hands on exercise
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Variants: alignment and pre-treatment; GATK
Genomics
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Initiation to R programming and descriptive statistics
• beginnerR-programming Descriptive statistics Statistics Bioinformatics -
Getting started with Bioschemas
• beginnerBioschemas Standards -
Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
Chip-seq: Pattern Analysis tutorial
Chip-seq NGS Pattern recognition
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Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
IFB Shiny training
•• intermediateR-programming Reproducible Science -
Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• intermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
Webinar, Slides, Video
WheatIS DataDiscovery webinar
• beginnerData management wheat information system data discovery -
Variant Filtering
Genomics
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Sequencing 6000 chloroplast genomes : the PhyloAlps project
metagenomics
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Chip-seq: Introduction to the Workshop
Chip-Seq
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Prototyping the new PSICQUIC 2.0
biohackaton 2018
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RGP finder: prediction of Genomic Islands
CDS Data visualization Genomics RGP
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Chip-seq: Functional Annotation tutorial
Chip-seq Functional Annotation NGS
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MG-RAST — experiences from processing a quarter million metagenomic data sets
metagenomics
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bio.tools & EDAM drop-in hackathon & discussions
biohackaton 2018
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PDF
Genome assembly with long reads
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200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics
metagenomics
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Multiple Comparative Metagenomics using Multiset k-mer Counting
metagenomics
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From Samples to Data : Assuring Downstream Analysis with Upstream Planning
metagenomics
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Exploiting collisions between DNA molecules to characterize the genomic structures of complex communities
metagenomics
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NGS data exploration with the MicroScope Platform
Genomics NGS RNA-seq SNP Transcriptomics
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Gut metagenomics in cardiometabolic diseases
metagenomics
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New perspectives on nitrite-oxidizing bacteria - linking genomes to physiology
metagenomics
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ETBII 2023
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Welcome message
biohackaton
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Holistic metagenomics in marine communities
metagenomics
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Assessing microbial biogeography by using a metagenomic approach
metagenomics
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Workshops and courses
Introduction à l'analyse de données métatranscriptomiques avec Galaxy
9 October 2024
Clermont-Ferrand, France
Face-to-face
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Workshops and courses
Introduction à l'annotation de génomes bactériens avec Galaxy
15 May 2024
Clermont-Ferrand, France
Face-to-face
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Workshops and courses
Introduction à la segmentation des nucléoles et extraction de caractéristiques avec Galaxy
11 December 2024
Clermont-Ferrand, France
Face-to-face
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Workshops and courses
Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session
14 - 16 October 2024
Paris, France
Face-to-face
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Workshops and courses
Principes FAIR pour la gestion des données - Session 2024 IBISA-IFB Lyon
11 June - 3 July 2024
Lyon
Face-to-face
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Journée thématique scientifique PF AuBi
30 March 2017
Plateau des Cézeaux, Aubière
Face-to-face
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Workshops and courses
Train-the-Trainer
1 - 2 July 2024
Marseille, France
Face-to-face
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Workshops and courses
Manipulating & Visualizing Data with R - 2024
23 May 2024
Roscoff, France
Face-to-face
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Hommage à Christophe Caron
28 September 2018
INRA de Jouy-en-Josas
Face-to-face
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Launching ProteoRE infrastructure
4 May 2018
Face-to-face
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Workshops and courses
Linux Avancé / Advanced Linux - 2024
29 May 2024
Roscoff, France
Face-to-face
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Workshops and courses
RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024
14 - 17 May 2024
Castanet Tolosan, France
Face-to-face
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Workshop Web Viewers
27 June 2017
Laboratoire MTi, Paris
Face-to-face
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Workshops and courses
Introduction à l'analyse de données de métabarcoding 16S avec Galaxy
19 June 2024
Clermont-Ferrand, France
Face-to-face
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Workshops and courses
5th workshop Single-Cell : Transcriptomics, Spatial and Long reads
20 - 25 October 2024
Roscoff, France
Face-to-face
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Workshops and courses
IMGT® standards, databases, tools and web resources - Session 2022
3 June 2022
Montpellier, France
Face-to-face
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Workshops and courses
Introduction au profilage taxonomique et visualisation de communautés microbiennes à partir de données métagénomiques avec Galaxy
11 September 2024
Clermont-Ferrand, France
Face-to-face
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Workshops and courses
Introduction à l'analyse d’images avec Galaxy
13 November 2024
Clermont-Ferrand, France
Face-to-face
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IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
143 training materials18 events (449 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://tess.elixir-europe.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557
Activity log
