Content Providers

  • Genomics Core KU Leuven/UZ Leuven

    The Genomics Core is a facility that advances the development and implementation of novel genomic...

    0 upcoming events (1 past event)
    Genomics Core KU Leuven/UZ Leuven https://tess.elixir-europe.org/content_providers/genomics-core-ku-leuven-uz-leuven The Genomics Core is a facility that advances the development and implementation of novel genomic technologies. The facility provides technological and intellectual support for scientific applications as well as next generation genetic diagnosis. The genomics core partners within the Universitaire ziekenhuizen KULeuven to enable the BELAC-accredited breast cancer (BRCA) genetic test as well as non-invasive prenatal testing (NIPT).
  • Flemish Supercomputer Centre

    The Flemish Supercomputer Centre (VSC) is a virtual centre making supercomputer infrastructure...

    0 upcoming events (66 past events)
    Flemish Supercomputer Centre https://tess.elixir-europe.org/content_providers/flemish-supercomputer-centre The Flemish Supercomputer Centre (VSC) is a virtual centre making supercomputer infrastructure available for both the academic and industrial world. This centre is managed by the Research Foundation - Flanders (FWO) in partnership with the five Flemish university associations. /system/content_providers/images/000/000/067/original/logo_VSC_CMYK-1.png?1487672198
  • VIB Bioinformatics Core

    Provider of Bioinformatics and software training, plus informatics services and resource...

    58 training materials
    1 upcoming event (201 past events)
    VIB Bioinformatics Core https://tess.elixir-europe.org/content_providers/bitsvib Provider of Bioinformatics and software training, plus informatics services and resource management support. /system/content_providers/images/000/000/042/original/bioinformatics_core_cmyk_pos.jpg?1539150443
  • VIB Conferences

    VIB is a life sciences research institute in Flanders, Belgium. More than 1470 scientists from...

    0 upcoming events (19 past events)
    VIB Conferences http://tess.elixir-uk.org/content_providers/vib-conferences VIB is a life sciences research institute in Flanders, Belgium. More than 1470 scientists from over 66 countries perform basic research into the molecular foundations of life. The institute offers a program of international VIB conferences in various VIB research fields. From day one VIB has supported and sponsored scientific conferences to help VIB scientists network with their colleagues. In 2014 the VIB Conference Series was launched to further expand these activities and support them with a dedicated professional team. The aims of the conference series are: to showcase cutting edge research and exciting technological solutions presented by leading scientist in the life sciences fields to offer junior researchers the opportunity to present their work during poster sessions and learn from the world’s experts during the Meet the Expert sessions to establish opportunities for collaborations between scientists during an accompanying social program including lunches, conference dinners and receptions /system/content_providers/images/000/000/054/original/vib_conferences_series_rgb_pos.png?1538645378
  • UCLouvain Bioinformatics Platform

    The platform's goak is to collaborate throughput the scientific community at the UCLouvain and...

    1 training material
    0 upcoming events (2 past events)
    UCLouvain Bioinformatics Platform https://tess.elixir-europe.org/content_providers/uclouvain-bioinformatics-platform The platform's goak is to collaborate throughput the scientific community at the UCLouvain and offer technical and methodological bioinformatics support, including, among others: support the bioinformatics aspects of grant proposals and experimental designs high throughput omics data analysis such as genomics, epigenetics and transcriptomics (RNASeq or microarrays) or mass spectrometry based proteomics and metabolomics help in utilisation of public databases (TCGA, Gtex, CCLE, ENCODE, ...) development of dedicated algorithms and software. The platform also organises workshops in data analysis and bioinformatics to introduce particpants to widely used languages such as R, and get them started in the analysis of their own omics data. For additional information and any collaboration requests, please contact us by email at contact-cbio@uclouvain.be describing your needs, including, if data is already available, the underlying technology and experimental design. Members Prof Laurent Gatto Mr Theo Killian Dr Axelle Loriot Contact: contact-cbio@uclouvain.be CBIO - de Duve Institute - UCLouvain Avenue Hippocrate, 75 - bte B1.74.10 1200 Brussels, Belgium
  • Showing 30 materials out of 59. View all results.
    Hands-on introduction to NGS variant analysis

    This training gives an introduction to the use of popular NGS analysis software packages at the command line. It reviews several exchangeable tools and provide hints to evaluate quality and content of DNA-Seq data by a biologist.
     
    This training does not cover all methods available today. It does...

    Scientific topics: DNA

    Mass spectrometry data processing

    In this training session we start by reviewing the types of mass spectrometer, and what the properties of their output data are. Out of our understanding of the data, we learn to extract meaningful interpretations.

    Scientific topics: Proteomics

    Analysis of public microarray data sets

    This training will give you an overview of what GEO has to offer. Several experiments will be analyzed using simple tools to obtain differential gene lists. An introduction to downstream tools dedicated to functional enrichment will close the session.

    Scientific topics: Expression data visualisation

    Analysis of public microarray data using Genevestigator

    The morning session will give you an overview of the possibilities of Genevestigator, a search engine of curated and normalized publicly available gene expression data. The interface allows you to visualize spatio-temporal (tissue - developmental stage) and perturbational gene expression...

    Scientific topics: Expression analysis, Gene expression, Biomarkers

    Analysis of qPCR data using qbase+

    This hands-on training provides an introduction to the analysis of qPCR data using Biogazelle's qbase+ software. Although this software allows to do various types of analyses (gene expression, copy number analysis, miRNA profiling), we will focus in the training on gene expression analysis....

    Scientific topics: PCR experiment, Expression analysis, Gene expression

    Analyzing biological networks with Ingenuity Pathway Analysis

    IPA is software that allows researchers to analyze, integrate and understand data derived from experiments that generate a list of relevant genes, proteins or chemicals. The software relies on the Ingenuity Knowledge Base, a thoroughly curated database of high quality information on biological...

    Basic statistics in R, part II

    This training builds further on the Basic statistics in R training, showing you how to do statistical analyses in R. Where the Basic statistics in R training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents), this training...

    Basics of databases and MySQL

    This hands-on training provides a comprehensive introduction to relational databases and the use of the MySQL relational database management system. MySQL is the leading free management system for relational databases. The training shows you how to use MySQL to efficiently store your data in...

    Building bioinformatics workflows

    This course presents a comprehensive overview of the principles and applications of scientific workflow systems. The course combines lectures with hands-on exercises in which the participants learn to apply these principles to real biomedical datasets. The course will be based on freely available...

    Cloning with SnapGene

    You will acquire the basic techniques that are used in recombinant DNA technology, particularly restriction enzymes, modification enzymes, polymerase chain reaction (PCR), plasmids (different vectors, mechanism to select and detect), site directed mutagenesis, heterologous gene expression in...

    Scientific topics: Expression analysis

    Comparative genomics in eukaryotes

    This course presents a comprehensive overview of the principles and applications of comparative genomics in eukaryotes. The course combines lectures with hands-on exercises.

    Data Carpentry Workshop - Data Management beyond Excel

    The main ambition of this workshop is that researchers will be able to handle their data in a more reproducible and efficient way. They should be able to retrieve, view, manipulate, process and manage their own and other one's data.
    The following topics will be covered during the workshop:

    ...

    Data manipulation in OpenRefine

    Most statistical and data mining tools assume that the data files are in a specific format, often completely different from the format that is created by the instrument that generates the data. Moreover, most of these tools only provide limited functionality for getting the raw data files in the...

    Downstream processing of RNA-Seq data in GenePattern

    • Run RNA-seq downstream processing analyses in GenePattern, such as clustering, classification, GSEA...
    • Use GenePattern to save workflows, ensure reproducibility and share methodologies with colleagues and reviewers
    • Use the GenePattern Notebook environment to create documents that interleave...

    Scientific topics: RNA-Seq

    GATK Best practices for variant discovery

    ÔÇïIn the course of this workshop, we highlight key functionalities such as 

    GVCF workflow for joint variant discovery in cohorts
    RNAseq-specific processing
    somatic variant discovery using MuTect2. 
    capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery
    the use...

    Scientific topics: RNA-Seq

    Gentle hands-on introduction to Perl programming

    This course is organised over two full days. With this extensive hands-on session, we introduce you Perl. The first day,we will cover the basics of Perl programming: what is a variable, different types, how to assign values to variable, what can you do with them, strings, arrays and hashes. Logic...

    Gentle hands-on introduction to Python programming

    This course is organised over two full days. With the help of plenty hands-on exercises, you will get introduced into the different types of variables in python, the peculiarities of python and good programming habits. This course will provide you an ideal stepping stone for further developing...

    Scientific topics: Software engineering

    Introduction to Affymetrix microarray analysis

    Following this training is a prerequisite to the training on the analysis of Affymetrix microarray data using free Affymetrix software. If you want to follow this training, you have to follow this introduction first.
    If you want to follow the Genevestigator training or the training on the...

    Scientific topics: Expression data visualisation, Gene expression

    Introduction to CLC Bio Main Workbench

    In this hands-on training you will learn how to use the CLC Bio Main Workbench for basic and advanced sequence analysis. The software supports a large number of DNA, RNA, and protein sequence analyses and microarray analysis.
    Since BITS provides a VIB-wide license to CLC Bio Main Workbench, this...

    Scientific topics: Expression data visualisation, Local alignment, Global alignment

    Introduction to network biology

    This course presents a comprehensive overview of the principles and applications of studying molecular networks. The course combines lectures with hands-on exercises in which the participants learn to apply these principles to real data. The course will be based on freely available data and...

    Introductory session on programming with Bioperl

    On the first day, we will refresh Perl syntax and types of variables. This basic knowledge will serve as a starting point to explain the use of subroutines, and how to make a module of your subroutine.
    On the second day we will prepare for Bioperl by explaining how you can reuse Perl code....

    Protein Structure Analysis

    This training session will provide the basics of protein structure determination and how this information is stored in databases. We will explore and search in online databases containing protein structure information. With the aid of the Yasara View program we will visualize the structure....

    Scientific topics: Protein structure analysis

    RNA-Seq analysis for differential expression

    We first perform quality control of the sequence reads to detect biases or leftover adaptors.
    We then map the reads to the reference genome with use of a transcript database model.
    We perform a detailed QC analysis of the mapping results to again detect potential problems.
    The mapping data is...

    Scientific topics: RNA-Seq, Gene expression, Differential gene expression profiling

    Text mining and curation

    This training will explain the basics of text mining, presenting the opportunities as well as the challenges of automatically extracting information from the literature. Further, the course will demonstrate how text mining data can be incorporated into a variety of applications and research...

    Scientific topics: Data submission, annotation, and curation, Natural language processing

    UCSC Genome Browser

    The UCSC Genome Browser provides a way to examine data from many genomes and includes extensive annotation tracks for various data types such as known UCSC (and Ensembl) genes, predicted genes, SNPs, miRNAs, comparative multi-species analysis and much more. During this training you will learn how...

    Basic statistics in R

    This training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, mathematical functions and some statistical techniques. R is for free...

    Keywords: Statistical calculation

    Hands-on introduction to ChIP-Seq analysis

    This training gives an introduction to ChIP-seq data analysis, covering the processing steps starting from the reads to the peaks. Among all possible downstream analyses, the practical aspect will focus on motif analyses. A particular emphasis will be put on deciding which downstream analyses to...

    Scientific topics: Mapping, ChIP-seq

    Introduction to Linux for bioinformatics

    This training is intended for all Linux novices who want to learn the basics of Linux without getting too much technical details.
    This hands-on training will show you how to effectively use Linux, a free operating system. Bioinformatics depends heavily on Linux-based computers and software. A lot...

    Introduction to the analysis of NGS data

    This training is a prerequisite introduction to a series of trainings on the analysis of NGS data for different applications: 'Hands-on introduction to NGS variant analysis', 'RNA-Seq analysis for differential expression', and 'Hands-on introduction to ChIP-Seq analysis'. If you want to follow...

    Scientific topics: Workflows, Sequence assembly

    Introductory statistics in GraphPad Prism

    This training gives an introduction to the use of statistics for basic analyses of life sciences data. The theoretical background obtained in the Basic statistics theory training  will be applied in a hands-on session on real-life data using the statistical software GraphPad...

    Showing 1 upcoming event. Found 289 past events. View all results.
    • Introduction to Git & GitHub

      13 September 2022

      Gent, Belgium

      Elixir node event