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GATK Best practices for variant discovery

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ÔÇïIn the course of this workshop, we highlight key functionalities such as 

GVCF workflow for joint variant discovery in cohorts
RNAseq-specific processing
somatic variant discovery using MuTect2. 
capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery
the use of pipelining tools to assemble and execute GATK workflows.

Target audience: Life Science Researchers, PhD students, beginner bioinformaticians, post-docs

Authors: Geraldine Van der Auwera

Remote created date: 2016-04-22

Remote updated date: 2017-10-09

Scientific topics: RNA-Seq

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