Register training material
3 materials found

Tools: ORGANISMS  or Zooma 


Annotating data using ontologies

This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems.

Scientific topics: Data management, Data integration and warehousing, Ontology and terminology

Keywords: Ontologies, Annotation, Data integration

Resource type: Video

Data harmonization and enrichment using EMBL-EBI ontology tools

This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data.
The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators...

Scientific topics: Data management, Data submission, annotation, and curation, Ontology and terminology

Keywords: CINECA, data harmonization, Annotation, Ontologies

Resource type: Video

Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware...

Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining