Training materials
Tools: ORGANISMS or MGnify (was EBI Metagenomics) or OMERO or Data Information System (DAISY) or Minimap2 or V-pipe
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Open educational resource
I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training
• beginnerOMERO Research Data Management REMBI Microscopy data Metadata I3D:bio RDM4mic data organisation -
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
Video
RDMbites | Storing bioimage metadata with OMERO
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Video
RDMbites: Image data
•• intermediateimaging data management -
Tutorial
Metagenomics Bioinformatics
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
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Analysing and visualising microbiome-derived datasets using the MGnify Web API
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data
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