Register training material
2 materials found

Tools: ORGANISMS  or Cufflinks 


Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware...

Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining

RNA-seq Analysis 2014 Module 4 - Isoform discovery and alternative expression

Explore use of Cufflinks in reference annotation based transcript (RABT) assembly mode and ‘de novo’ assembly mode. Both modes require a reference genome sequence.
 

Scientific topics: RNA

Keywords: Alternative expression, Transcript isoforms