Register training material
2 materials found

Tools: ORGANISMS  or CARNIVAL 


Tutorial on CARNIVAL

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

Scientific topics: Molecular interactions, pathways and networks, Gene expression, Omics, RNA-Seq

Operations: Network analysis, RNA-Seq analysis

Keywords: HPC, Signaling, RNAseq, transcriptomics

Resource type: Tutorial

Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware...

Scientific topics: Microbial ecology, Metagenomics, Natural language processing, Data mining