Training materials
Tools: MGnify (was EBI Metagenomics) or tidybulk or EXTRACT or BEDTools or WebMaBoSS
-
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Tutorial
A Tidy Transcriptomics introduction to RNA-Seq analyses
• beginnerRNA-Seq Differential Expression Gene Expression RNA-seq Transcriptomics -
Tutorial
Metagenomics Bioinformatics
-
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
-
Analysing and visualising microbiome-derived datasets using the MGnify Web API
-
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining