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6 materials found

Tools: MGnify (was EBI Metagenomics)  or DISEASES 

Metagenomics Bioinformatics

Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high throughput sequencing of the microbial DNA, collecting, archiving and resharing the genomic data for taxonomic and functional analysis.

Scientific topics: Metagenomics

Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology

Resource type: Tutorial

Metagenomics Bioinformatics http://tess.elixir-uk.org/materials/metagenomics-bioinformatics Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high throughput sequencing of the microbial DNA, collecting, archiving and resharing the genomic data for taxonomic and functional analysis. Alex Mitchell Varsha Kale Rob Finn Guillermo Rangel Pineros Rebecca Campos Metagenomics Metagenomics, MGnify, Sequence Analysis, Microbiology Life Scientists
EBI Metagenomics: analysing and exploring metagenomics data

EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets...

Scientific topics: Metagenomics

Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology

Resource type: Webinar

EBI Metagenomics: analysing and exploring metagenomics data http://tess.elixir-uk.org/materials/ebi-metagenomics-analysing-and-exploring-metagenomics-data EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive. Alex Mitchell Metagenomics Metagenomics, MGnify, Sequence Analysis, Microbiology Life Scientists
Analysing and visualising microbiome-derived datasets using the MGnify Web API

MGnify (formerly EBI Metagenomics) is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available...

Analysing and visualising microbiome-derived datasets using the MGnify Web API http://tess.elixir-uk.org/materials/analysing-and-visualising-microbiome-derived-datasets-using-the-mgnify-web-api MGnify (formerly EBI Metagenomics) is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets drawn from the European Nucleotide Archive (ENA).
Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

Scientific topics: Data mining, Natural language processing, Metagenomics, Microbial ecology

Text-mining exercises http://tess.elixir-uk.org/materials/text-mining-exercises Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies. Manimozhiyan Arumugam Data mining Natural language processing Metagenomics Microbial ecology Bioinformaticians Biologists
STRING exercises

Hands-on exercises using the STRING, STITCH, and DISEASES databases through their respective web interfaces.

Scientific topics: Protein interactions, Molecular interactions, pathways and networks, Bioinformatics

STRING exercises http://tess.elixir-uk.org/materials/string-exercises Hands-on exercises using the STRING, STITCH, and DISEASES databases through their respective web interfaces. Protein interactions Molecular interactions, pathways and networks Bioinformatics Bioinformaticians Biologists
Cytoscape stringApp exercises

Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases.

Scientific topics: Data visualisation, Proteomics, Protein interactions, Molecular interactions, pathways and networks, Bioinformatics

Cytoscape stringApp exercises http://tess.elixir-uk.org/materials/cytoscape-stringapp-exercises Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases. John "Scooter" Morris Data visualisation Proteomics Protein interactions Molecular interactions, pathways and networks Bioinformatics Bioinformaticians Biologists