Training materials
Tools: Cytoscape or MGnify (was EBI Metagenomics) or Minimap2 or OMERO or ORGANISMS
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Open educational resource
I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training
• beginnerOMERO Research Data Management REMBI Microscopy data Metadata I3D:bio RDM4mic data organisation -
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Video
RDMbites | Storing bioimage metadata with OMERO
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Video
RDMbites: Image data
•• intermediateimaging data management -
Identifier mapping with Cytoscape
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Tutorial
Metagenomics Bioinformatics
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
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Analysing and visualising microbiome-derived datasets using the MGnify Web API
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Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation