Training materials
Tools: BridgeDb API or Datanator or InterMineR or Minimap2 or ORGANISMS or UPMaBoSS
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Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining