Training materials
Tools: BridgeDb API or BridgeDbR or InterMineR or ORGANISMS or PathVisio or SEEK or STITCH
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Slides
Life Sciences Research Data Management 2023 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
Tutorial, hands-on tutorial
WikiPathways Academy
• beginnerBiology Systems biology Pathway WikiPathways Biocuration -
Identifier mapping with Cytoscape
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Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Tutorial
#metawinterschool contribution by BiGCaT
• beginnerMetabolomics Identifiers ELIXIR RIR, BridgeDb -
Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions
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