Training materials
Tools: BridgeDb or ChEBI or European Nucleotide Archive (ENA) or ORGANISMS or PLAZA dicots
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Slides
Life Sciences Research Data Management 2023 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
lessons, e-learning
Introduction to Data Management Practices - Data publication
• beginnerData management Open science FAIR data FAIR CONVERGE -
Identifier mapping with Cytoscape
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Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
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Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining