Training materials
Tools: BridgeDb or CellNOptR or ChEBI or PLAZA dicots or Zooma or neXtProt or runBioSimulations
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Tutorial
From transcriptomics to mechanistic models of signalling
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lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies -
e-learning
neXtProt : Exploring human proteins
• beginnerProteins Proteomics Proteins (proteins) human -
hands-on tutorial
Information about chemicals
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Tutorial
Tutorial on CellNOpt
•• intermediatePersonalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling -
Identifier mapping with Cytoscape
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Video
Data harmonization and enrichment using EMBL-EBI ontology tools
• beginnerData management Data submission, annotation, and curation Ontology and terminology CINECA data harmonization Annotation Ontologies
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