Training materials
Tools: BioSimulations or BridgeDb or Cufflinks or ORGANISMS or PhysiCell or RCy3 or TargetMine
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Tutorial, Presentation
Materials from 'Introduction to High Performance Computing for Life Scientists' course
•• intermediateComputational biology HPC GPU parallel computing -
hands-on tutorial
Information about chemicals
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Identifier mapping with Cytoscape
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Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
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Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
TargetMine tutorials Tutorials for an InterMine designed to help identify drug targets.
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Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
RNA-seq Analysis 2014 Module 4 - Isoform discovery and alternative expression