Training materials
Tools: AlphaFold 2 or Cufflinks or InterMine or MaBoSS or ORGANISMS or PhysiCell or nextstrain.org
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Tutorial, Presentation
Materials from 'Introduction to High Performance Computing for Life Scientists' course
•• intermediateComputational biology HPC GPU parallel computing -
e-learning
Interpret phylogenetic data to track SARS-CoV-2 evolution
• beginnerVirology Phylogenetics SARS-CoV-2 -
Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
RNA-seq Analysis 2014 Module 4 - Isoform discovery and alternative expression