Training materials
Tools: AlphaFold 2 or BEDTools or BioSimulators or DISEASES or InterMineR or MaBoSS
-
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation