Training materials
Related resources: GEEM or GPAP: the RD-Connect Genome-Phenome Analysis Pl... or Genome Annotation slides or GitHub or Variant Analysis dataset
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Variant Analysis - Calling variants in non-diploid systems
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Tutorial
Variant Analysis - Exome sequencing data analysis