Training materials
Related resources: Data Visualisation (theory) or GEEM or Genome Annotation slides or Introduction to Galaxy dataset or Introduction to the EGA and sharing sensitive data or Proteomics dataset
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lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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Tutorial
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
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Tutorial
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
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Tutorial
Proteomics - Secretome Prediction
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Tutorial
Proteomics - Metaproteomics tutorial