Training materials
Related resources: Assembly slides or HoloFood Project or Proteomics dataset or Public Health Alliance for Genomic Epidemiology or Slides | Beacon v2: a discovery tool for genomi... or Variant Analysis dataset
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Variant Analysis - Calling variants in non-diploid systems
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Tutorial
Assembly - Unicycler Assembly
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Variant Analysis - Exome sequencing data analysis
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Tutorial
Assembly - De Bruijn Graph Assembly
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