Training materials
Scientific topics: CWL or High-throughput sequencing or Software engineering or Workflows
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Installation instructions, Manual
How to use Common Workflow Language
• beginnerWorkflows commonwl common workflow language CWL eLearning EeLP -
Introduction to R
• beginnerSoftware engineering R programming Babraham Institute -
Learning Python
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Python for Biologists: Programming for Scientific Computing
• beginnerSoftware engineering Python for Biologists John Innes Centre JIC -
Introduction to R: A software environment for statistical computing
• beginnerStatistics and probability Software engineering John Innes Centre JIC -
Introduction to Perl: Programming for bioinformatics
• beginnerSoftware engineering perl John Innes Centre JIC -
Galaxy for NGS analysis: A web-based platform for data intensive biological research
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Python programming primer
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Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming