Training materials
Tools: Bioconductor or COPASI or MGnify (was EBI Metagenomics) or ORGANISMS or Ontology Lookup Service or PLAZA dicots
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02: Practical: R / Bioconductor and Reproducible Research
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01: Introduction to R and Bioconductor
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Developing robust and efficient code
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Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
Working with DNA Sequences
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RNA-Seq Lab: Workflow -- gene-level exploratory analysis and differential expression
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Multiple testing
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Webinar
Ontology Lookup Service (OLS)
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Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining