Register training material
169 materials found

Target audience: Biologists, Genomicists, Co... 


Plant Phenotyping Data managment Webinar (MIAPPE)

The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...

Scientific topics: Data submission, annotation, and curation, Data quality management, Phenomics, Plant biology

Operations: Standardisation and normalisation

Resource type: Video, Slides

How to use V-pipe (SARS-CoV-2 data)

This tutorial demonstrate how to use V-pipe - Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations.

For the purpose of this toturial, we use the sars-cov2 branch of V-pipe and analyse SARS-CoV-2 runs downloaded from NCBI SRA.

Scientific topics: Workflows, Genetic variation, Virology

Operations: Read pre-processing, Alignment, Variant calling

Keywords: coronavirus, NGS bioinformatics, Variant-calling

Resource type: Computer Software, workflow

Constraint-based reconstruction and analysis toolbox tutorials

A suite of >50 tutorials to enable beginners, as well as intermediate and advanced users to practice a wide variety of COBRA methods. Each tutorial is presented in a variety of formats, including as a MATLAB live script, which is an interactive document, or narrative...

Keywords: Biomodelling

Resource type: Tutorial

Infectious Disease Genomic Epidemiology 2018 Module 7-Data Visualization

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 6-Emerging Pathogen Detection and Identification Using Metagenomics Samples

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 5-Phylogeographic Analysis

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 4-Antimicrobial Resistance Genes

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 3-Pathogen Genomic Analysis 2

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 2-Pathogen Genomic Analysis 1

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 1-Introduction to Public Health Microbiology and Genomic Epidemiology

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Pathways and Network Analysis of -Omics data 2018 Module 6-Regulatory Network Analysis

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 5-Gene Function Prediction

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 4-More Depth on Network and Pathway Analysis

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 3-Network Visualization and Analysis with Cytoscape

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics Data 2018 Module 2-Finding Over-Represented Pathways

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics Data 2018 Module 1-Introduction to Pathway and Network Analysis

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Epigenomic Data Analysis 2018 Module 4-Downstream Analyses and Integrative Tools

Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages.

Epigenomic Data Analysis 2018 Module 3-Introduction to WGBS and Analysis

Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages.

Epigenomic Data Analysis 2018 Module 2-ChIP-Seq Alignment, Peak Calling, and Visualization

Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages.

Epigenomic Data Analysis 2018 Module 1-Introduction to ChIP Sequencing and Analysis

Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages.

Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 6-Epigenetic Profiling in Disease

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 5-Available Epigenetics Data and Resources

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 4-Translating Research Workflows into Clinical Tests

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 3-Variant Annotation

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 2-Introduction to Tools, Computing Infrastructure, and Data

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 1-Introduction to Genetic Disorders

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Informatics and Statistics for Metabolomics 2018 Module 6-Future of Metabolomics

Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases.

Informatics and Statistics for Metabolomics 2018 Module 5-MetaboAnalyst

Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases.

Informatics and Statistics for Metabolomics Module 4-Backgrounder in Statistics

Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases.