Training materials
Licence: Creative Commons Attribution 4.0 International
and Scientific topics: Toxicology or Marine biology or Sequence analysis or Data architecture, analysis and design
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
WORKSHOP: R: fundamental skills for biologists
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hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediateSequence analysis sequence-analysis covid19 -
hands-on tutorial
Hands-on for 'Quality Control' tutorial
• beginnerSequence analysis sequence-analysis -
Presentation
Reproducible analysis
• beginnerData architecture, analysis and design Workflows Literate programming Reproducible Science Data analysis -
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
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Tutorial
OpenRiskNet: Ontology Walkthrough and Workshop
• beginnerToxicology Ontology and terminology -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF