Training materials
Difficulty level: Beginner
and Scientific topics: Bioimaging or Mapping or Metagenomics or Natural language processing or Phylogenetics
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hands-on tutorial
Hands-on for 'Taxonomic Profiling and Visualization of Metagenomic Data' tutorial
• beginnerMetagenomics metagenomics taxonomic profiling -
e-learning
Interpret phylogenetic data to track SARS-CoV-2 evolution
• beginnerVirology Phylogenetics SARS-CoV-2 -
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
hands-on tutorial
Hands-on for 'Assembly of metagenomic sequencing data' tutorial
• beginnerMetagenomics metagenomics assembly -
hands-on tutorial
Hands-on for 'Identification of the micro-organisms in a beer using Nanopore sequencing' tutorial
• beginnerMetagenomics metagenomics nanopore beer citizen science -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens -
Video, course materials
Metagenomics data analysis
• beginnerMetagenomics -
Computational Bioimaging: From images to data
• beginnerImaging Bioimaging John Innes Centre JIC