Training materials
Contributors: Dr. Nils Gehlenborg or Ajay Pillai or Vasundra Touré or Gildas Le Corguillé
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hands-on tutorial
Hands-on for 'De novo transcriptome assembly, annotation, and differential expression analysis' tutorial
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hands-on tutorial
Hands-on for 'Mass spectrometry: LC-MS preprocessing with XCMS' tutorial
•• intermediateMetabolomics metabolomics -
hands-on tutorial
Hands-on for 'Mass spectrometry: LC-MS analysis' tutorial
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slides
Slides for 'Tool development and integration into Galaxy' tutorial
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slides
Introduction to 'Metabolomics'
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Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Notes, Scripts
MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools
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Video
Visualization Approaches for Biomedical Omics Data: Putting It All Together