Training materials
Contributors: Canadian Bioinformatics Workshops or Maria Doyle or Pinar Alper or Sabine Österle
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hands-on tutorial
Hands-on for '1: RNA-Seq reads to counts' tutorial
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hands-on tutorial
Hands-on for 'Visualization of RNA-Seq results with heatmap2' tutorial
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hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnerTranscriptomics transcriptomics bulk rna-seq collections drosophila QC cyoa -
slides
Slides for 'Introduction to CRISPR screen analysis' tutorial
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slides
Slides for 'Getting data into Galaxy' tutorial
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hands-on tutorial
Hands-on for 'Quality Control' tutorial
• beginnerSequence analysis sequence-analysis -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR Standards Ontology SNOMED CT LOINC ATC CHOP ICD Interoperability -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation